I am having the same problem while running PALM. I get the following output:
Running PALM alpha116 using MATLAB 9.7.0.1190202 (R2019b) with the following options:
-i Cope10combinednew.dtseries.nii
-transposedata
-d designmatrix.mat
-t C.con
-eb EBnew.csv
-o results
-n 5000
-corrcon
-logp
-accel tail
-nouncorrected
Found HCP Workbench executable in /usr/local/connectome-workbench/1.3.2/bin_rh_linux64/wb_command
Reading input 1/1: /fs/project/PAS1418/hcppalm/motor_01_13_2020/Cope10combinednew.dtseries.nii
Reading design matrix and contrasts.
Elapsed time parsing inputs: ~ 7.05839 seconds.
Number of possible permutations is 1.
Generating 1 shufflings (permutations only).
Building null distribution.
50% [Design 1/1, Contrast 1/2, Shuffling 1/1, Modality 1/1]
Saving file: /fs/project/PAS1418/hcppalm/results_dat_tstat_c1
Number of possible permutations is 1.
Generating 1 shufflings (permutations only).
Building null distribution.
100% [Design 1/1, Contrast 2/2, Shuffling 1/1, Modality 1/1]
Saving file: results_dat_tstat_c2
Elapsed time with permutations: ~ 10.6722 seconds.
Computing p-values.
Saving p-values (uncorrected, and corrected within modality and within contrast).
{Unable to perform assignment because the size of the left side is 1-by-1 and
the size of the right side is 0-by-1.
Error in palm_competitive (line 96)
S(infpos,c) = max(S(~infpos,c)) + 1;
Error in palm_datapval (line 67)
[~,cdfG,distp] = palm_competitive(Gvals(:),'descend',true);
Error in palm_pareto (line 78)
P = palm_datapval(G,Gdist,rev);
Error in palm_saveall (line 246)
Ptosave =
palm_pareto(plm.G{y}{m}{c},plm.Gmax{y}{m}{c},false,opts.accel.tail_thr,opts.accel.G1out);
Error in palm_core (line 2489)
palm_saveall(plm,opts);
Error in palm (line 81)
palm_core(varargin{:});
}
I am working with the HCP data (restricted and unrestricted).
Any suggestions/help would be appreciated!
Thanks,
Kelly
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