Hi
It seems that you have a broken/incomplete install of Sun Grid Engine on your system - what do you get from
env | grep SGE
on your system? If there is an environment variable SGE_ROOT set then unset this and try again
hth
Christian
On 18 Jun 2010, at 18:46, Patrick Bedard wrote:
> Hi all,
>
> I am trying to run MELODIC on a resting state scan. I have never used it before so I'm nor fully sure how it goes.
> But I don't think it's running correctly as I have an error message that I don't really understand (see below for the whole web output).
> the message is : fsl_sub: line 347: exec: qsub: not found
>
> /bin/cp /tmp/feat_ejbklU.fsf design.fsf
>
> mkdir .files;cp /homes/pbedard/Pat/fsl/doc/fsl.css .files;ln -s /homes/pbedard/Pat/fsl/doc/images .files/images
>
> /homes/pbedard/Pat/fsl/bin/fsl_sub -T 21 -l logs -N feat2_pre /homes/pbedard/Pat/fsl/bin/feat /Network/Servers/saneslab.saneslab.priv/Volumes/RAID_2/pat_b/PD_IM_fMRI/ct1/mri/images/s1_rest1_scaled.ica/design.fsf -D /Network/Servers/saneslab.saneslab.priv/Volumes/RAID_2/pat_b/PD_IM_fMRI/ct1/mri/images/s1_rest1_scaled.ica -I 1 -prestats
> /homes/pbedard/Pat/fsl/bin/fsl_sub: line 347: exec: qsub: not found
>
> /homes/pbedard/Pat/fsl/bin/fsl_sub -T 30 -l logs -N feat3_reg /homes/pbedard/Pat/fsl/bin/feat /Network/Servers/saneslab.saneslab.priv/Volumes/RAID_2/pat_b/PD_IM_fMRI/ct1/mri/images/s1_rest1_scaled.ica/design.fsf -D /Network/Servers/saneslab.saneslab.priv/Volumes/RAID_2/pat_b/PD_IM_fMRI/ct1/mri/images/s1_rest1_scaled.ica -I 1 -reg
> /homes/pbedard/Pat/fsl/bin/fsl_sub: line 347: exec: qsub: not found
>
>
> Patrick Bédard
>
> thanks in advance for your help
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