Hi,
Matthew pointed me to this potential bug in the Debian package today.
On Wed, Feb 06, 2008 at 02:49:34PM +0000, Saad Jbabdi wrote:
> I can't replicate that :-(
> Can you email me a copy/paste of the command line you're using?
Did you try to replicate using the Debian package itself or the original
distribution?
I looked at the diff to the original distribution and I cannot see
something that could cause this behavior. See here:
http://ftp.de.debian.org/debian/pool/non-free/f/fsl/fsl_4.0.3-1.diff.gz
If the bug is only in the Debian package, it me be that the sources were
broken when I downloaded them from fmrib. If that is the can I will
redownload them and check.
Cheers,
michael
> On 5 Feb 2008, at 18:34, Matt Glasser wrote:
>
>> Saad,
>>
>> I think this just started happening with the latest patch 4.0.3-1. I
>> tried it on two separate computers running ubuntu gutsy 64bit (fsl from
>> the hanke packages). I didn’t do any custom modification or compiling
>> of FDT. Where did you place the --forcedir option in the commandline?
>>
>> Thanks,
>>
>> Matt.
>> From: FSL - FMRIB's Software Library [mailto:[log in to unmask]] On
>> Behalf Of Saad Jbabdi
>> Sent: Tuesday, February 05, 2008 12:56 PM
>> To: [log in to unmask]
>> Subject: Re: [FSL] Probtrackx Bug +
>>
>> Hi Matt
>> This is strange, I can't replicate this in any of the released
>> versions of FDT since FSL4.0. When I do --forcedir, it does not add a +
>> for me!
>>
>> As for choosing the output file name, it will be in the next patch!
>>
>> Cheers,
>> Saad.
>>
>> On 4 Feb 2008, at 19:06, Matt Glasser wrote:
>>
>>
>> Hi probtrackx coders,
>> It seems that the --forcedir switch has recently stopped working in
>> probtrackx, and instead of overwriting old results it is putting the
>> pluses. This breaks my scripts unfortunately. L Can you look into this
>> bug? Also, Tim sent me some code a while back that allowed probtrackx
>> to output a specific file name in path distribution mode a while ago. I
>> was wondering if that ever made it into the FSL releases.
>> Thanks,
>> Matt.
>>
>> ----------------------------------------------------------------------
>> -----
>> Saad Jbabdi,
>> Postdoctoral Research Assistant,
>> Oxford University FMRIB Centre
>>
>> FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
>> +44 (0) 1865 222545 (fax 222717)
>> [log in to unmask] http://www.fmrib.ox.ac.uk/~saad
>> ----------------------------------------------------------------------
>> -----
>>
>>
>>
>>
>>
>
> ------------------------------------------------------------------------
> ---
> Saad Jbabdi,
> Postdoctoral Research Assistant,
> Oxford University FMRIB Centre
>
> FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
> +44 (0) 1865 222545 (fax 222717)
> [log in to unmask] http://www.fmrib.ox.ac.uk/~saad
> ------------------------------------------------------------------------
> ---
>
>
>
>
--
GPG key: 1024D/3144BE0F Michael Hanke
http://apsy.gse.uni-magdeburg.de/hanke
ICQ: 48230050
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