Hi Fadel,
Do you specifically want to use the ANALYZE file format? This is
strongly discouraged, as you will lose the image orientation
information.
If you just need .hdr/.img pairs. you can use NIFTI_PAIR instead of ANALYZE.
Cheers,
Paul
On 05/03/2019, Fadel Zeidan <[log in to unmask]> wrote:
> Hi FSL experts,
>
> I use FSL to convert my nifti files to .img + .hdr for figures.
>
> I recently upgraded to FSL 6.0 and am running my normal command:
>
> fslchfiletype ANALYZE myniftifile.nii.gz
>
> I then receive the following message: "ERROR:: Unrecognised value (ANALYZE)
> of environment variable FSLOUTPUTTYPE
> Legal values are: NIFTI, NIFTI_PAIR, NIFTI_GZ, NIFTI_PAIR_GZ"
>
> Any suggestions here? Do I need use mricron now?
>
> Thanks a bunch.
>
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