> If the 'Show Assignments' check button is not checked then the graphics is
> supposed to show all the atoms. If it is checked it is supposed to show
> only the assigned atoms. Are people finding this wording confusing or is
> this not working as stated (we just tried here and it seemed ok)?
>
Ah - perhaps the difference is between 'Assignments' and 'Atom Labels'.
I currently don't have anything assigned, so under 'Show Assignments' I
get no labels at all and all atoms are grey. When 'Show Assignments' is
unclicked, I get generic 'Atom Labels' (C, N, HA etc.) and atom-type
colouring (but still no 'Assignments').
Vicky
> Tim is not sure if the Pro O is just a wonky coordinate we happened to get
> (from somewhere) or what.
>
> Wayne
>
> On Wed, 5 Mar 2008, Vicky Higman wrote:
>
>
>>> Anyone else missing the atom labels from the graphics in the
>>> Molecules->Residue information popup?
>>>
>> Yes, but if you click on 'Show Assignments' they appear - the toggle is
>> working the wrong way round, I think.
>>
>>
>>> Also, the Gly & Pro representations seem to be mangled with extra
>>> bonds etc.
>>>
>> Looked okay to me (it makes more sense once you have the assignments
>> switched on and heteroatoms are coloured), but the positioning of the
>> oxygen in Pro is rather strange.
>>
>>
>>
>>> I'm also getting
>>>
>>> Deprecated: getByKey called with too short key
>>> from doLoad line 770 in
>>> /usr/local/ccpnmr/ccpnmr1.0/python/memops/format/xml/XmlIO.py:
>>> [" obj = oo.getByKey(endMap['class'],useKey)\n"]
>>> .....
>>>
>>>
>> That always happens and I was told that there is nothing to worry about
>> here.
>>
>> Vicky
>>
>>
>>
>> --
>> ****************************************************
>> Dr. Victoria A. Higman
>> Leibniz-Institut fuer Molekulare Pharmakologie (FMP)
>> NMR-Supported Structural Biology
>> Robert-Roessle-Str. 10
>> 13125 Berlin
>> Germany
>> E-mail: [log in to unmask]
>> ****************************************************
>>
>>
>
>
--
****************************************************
Dr. Victoria A. Higman
Leibniz-Institut fuer Molekulare Pharmakologie (FMP)
NMR-Supported Structural Biology
Robert-Roessle-Str. 10
13125 Berlin
Germany
E-mail: [log in to unmask]
****************************************************
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