Hello,
You can definitely rename the top-level ccpnmr directory, I do that all the time (I have N versions on my computer, so I do this all the time). (It might not be on your PATH any more, but likely that would be what you wanted.)
On the doc front, I think that help page never existed (nor for most of the Format Converter dialogs). So likely that button should just be grayed out.
Wayne
On 27 Oct 2014, at 13:45, Aswani Kumar Kancherla wrote:
> Hello Dr. Wayne,
>
> many thanks for the prompt reply.
>
> I figured out that I could also go to "MainMenu:: Resonances" and then re-assign
> the Hba and Hbb to appropriate stereospecific assignments.
>
> As I have mentioned in my previous mail, I am not able to access some of the
> help pages. Where could be the problem? Also, kindly clarify if what I did was
> right for updating the analysis version i.e. I renamed the "ccpnmr" directory
> containing the old version to "ccpnmr_x.y" and uncompressed the downloaded file
> to "ccpnmr".
>
> with regards,
> Aswani
>
>
>> Hello,
>>
>> You can stereospecifically assign a peak (dimension) by clicking on the peak in
>> the peak table and clicking on the Assign button (or clicking on a peak in a
>> spectrum display window and hit the 'a' key). Then (in the Assignment:
>> Assignment Panel dialog) click on the relevant Hba (or whatever) in the relevant
>> dimension table at the left, then click the Re-assign **** button (**** specific
>> to what you are doing). In that (the Molecule: Atom Browser dialog) you can
>> click on Hb2 (or whatever), although you need to make sure that "stereospecific"
>> is checked in the Options tab in order for this option to be shown. That should
>> do it.
>>
>> Wayne
>>
>> On 27 Oct 2014, at 07:28, Aswani Kumar wrote:
>>
>>> Hello Analysis Developers,
>>>
>>> I am using Analysis Version 2.4 release 0 on Linux SuSe11.4.
>>>
>>> I have assigned the H-beta methylene protons non-stereopspecifically as Hba
>>> and Hbb. Now I have the information to assign them stereospecifically ( using
>>> 3D-HNHB and HN(CO)HB). What is the best way to change the non-stereospecific
>>> assignments to stereopsecific assignmets?
>>>
>>> I tried to set the status of prochiral protons using "Format Converter ->
>>> Process -> Check Stereo Status Prochiral". The following error came up
>>> (traceback is attached at the end of the e-mail).
>>>
>>> I am also not able to access the help page for this pop-up window by clicking
>>> the question mark on the right bottom of the pop-up window. The designated
>>> html file is not there at the appropriate location. The missing html help
>>> file is supposed to be at the location
>>> "/home/nmrware/ccpnmr/ccpnmr2.4/python/ccpnmr/format/doc/ProchiralStatus.html"
>>>
>>> Many thanks in advance.
>>>
>>> with regards,
>>> Aswani Kumar
>>>
>>>
>>> PS: I have recently upgraded Analysis from Version 2.1 to 2.4. The way I did
>>> this was: (1) I downloaded tar file for the precompiled binaries of latest
>>> version. (2). Renamed the old ccpnmr folder to ccpnmr_2.1 (3). untarred the
>>> new file
>>>
>>>
>>> traceback
>>> =============================================================================================================================
>>> Exception in Tkinter callback
>>> Traceback (most recent call last):
>>> File "/home/nmrware/ccpnmr/python2.6/lib/python2.6/lib-tk/Tkinter.py", line
>>> 1410, in __call__
>>> return self.func(*args)
>>> File
>>> "/home/nmrware/ccpnmr/ccpnmr2.4/python/ccpnmr/format/gui/ProchiralStatusPopup.py",
>>> line 424, in setStereo
>>> (stereoStatus,stereoStatusChanged,resChanged,resonances) =
>>> self.chainResonancesDict[self.resParent][chain][i]
>>> =============================================================================================================================
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>>
>
>
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