Hi all,
I am trying to render EM maps in CCP4MG and am having trouble. I have uploaded an MRC map and was wondering what settings are usually adjusted so that I can highlight specific features.
I load the mrc file, and it asks if it is an EM map. Then after loading, there is a large cube that has the map in it, but no obvious contour. I went to preferences --> maps --> max/min contour level for RMSD setting to ~10. In coot, rendering around anywhere from 3-10 is suitable for this dataset. However, this doesn't translate to CCP4Mg. Moving the contour around doesn't really change the map.
When using XRD maps, I can always just contour the RMSD to the appropriate level and clip to the region.
What other settings should I be changing?
Thanks!
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