Hi Yuri,
You may want to try the free Discovery Studio Visualizer:
http://accelrys.com/products/discovery-studio/visualization-download.php
You can display sequence alignments and then color based on similarity, which can then be exported as images. Enclosed is an example of such an image.
Cheers,
Francisco
-----Original Message-----
From: CCP4 bulletin board [mailto:[log in to unmask]] On Behalf Of Yuri
Sent: Thursday, August 18, 2011 4:32 PM
To: [log in to unmask]
Subject: [ccp4bb] Sequence Alignment Question
Hello Everyone,
A little off topic but, what is a good way to show (publication
quality) multiple sequence alignment?
I am trying to show conserved regions in related proteins from different organisms.
Thank you
--
Yuri Pompeu
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