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CCP4BB List Archives2024-03-19T07:35:19ZPowered by L-Soft's LISTSERV mailing list manager
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http://www.lsoft.com/images/listserv_small.gifRunning Crank2 via Command Line
https://www.jiscmail.ac.uk/cgi-bin/wa-jisc.exe?A2=CCP4BB;aed1cdcc.2403
Hello everyone,<br><br>I'm reaching out to inquire if anyone has experience with executing Crank2 through the command line. I attempted utilizing the crank command, but it appears an XML input is required. To generate the XML file, I employed gcx with the following parameters:<br><br>gcx SEQIN /mnt/ssd/SAD/5uxx/rcsb_pdb_5UXX.fasta << END<br>XTAL DEFAULT<br>ATOM Se<br>DNAM PEAK<br>MTZI /mnt/ssd/SAD/5uxx/AUTOMATIC_DEFAULT_free.mtz<br>outp gcx<br>END [...]
2024-03-19T07:35:08+00:00zx2020@connect.hku.hkhttps://www.jiscmail.ac.uk/cgi-bin/wa-jisc.exe?A2=CCP4BB;aed1cdcc.2403Call for targets for the 2024 CASP modeling experiment
https://www.jiscmail.ac.uk/cgi-bin/wa-jisc.exe?A2=CCP4BB;fc54a9fa.2403
CASP (Critical Assessment of Structure Prediction) experiments are held<br>every two years. Recent rounds have seen dramatic increases in modeling<br>accuracy, resulting from the introduction of deep learning methods: In<br>2018, for the first time, the folds of most proteins were correctly<br>computed [1]; in 2020, the accuracy of many computed protein structures<br>rivaled that of the corresponding experimental ones [2]; in 2022, there<br>was an enormous increase in the accuracy of protein complexes [3]. [...]
2024-03-18T18:16:33-07:00Andriy Kryshtafovychhttps://www.jiscmail.ac.uk/cgi-bin/wa-jisc.exe?A2=CCP4BB;fc54a9fa.2403Reminder: CBMS Lecture Series; Dessen, March 20.
https://www.jiscmail.ac.uk/cgi-bin/wa-jisc.exe?A2=CCP4BB;da2eb988.2403
You are cordially invited to join the Center for Biomolecular Structure Lecture Series ………..<br><br>Andrea Dessen<br><br>CNRS Research Director<br><br>Institut de Biologie Structurale, France<br><br>WEDNESDAY, March 20, 13:30 (EDT)<br><br>"Architecture and Genomic Arrangement of Bacterial Cell Biosynthesis Complexes"<br><br>Register in advance for this meeting:<br><br>https://bnl.zoomgov.com/meeting/register/vJIsdOysqzoiHJzcKLSKZqX5jfwZQcIozkM<br><br> Time conversion Link: https://www.worldtimebuddy.com/<https://urldefense.com/v3/__https://gcc02.safelinks.protection.outlook.com/?url=https*3A*2F*2Fwww.worldtimebuddy.com*2F&data=05*7C01*7Cgenoa.blankenship*40pnnl.gov*7C67ffe754733240e42d3e08da641ba4bc*7Cd6faa5f90ae240338c0130048a38deeb*7C0*7C0*7C637932367171794987*7CUnknown*7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0*3D*7C3000*7C*7C*7C&sdata=aSe2IUSomjge9ZW6zXdQ81fPzxpg8eawtRkoiOEJdXM*3D&reserved=0__;JSUlJSUlJSUlJSUlJSUlJSUlJSU!!P4SdNyxKAPE!Fd5kIAbibocFpkUaEbpqZZGm8tw-xiqb5oC4sfOklv6Kbbf-T3RvUobMSLrzyXNbfNVT9vMxJGuY1RsSqbc6MjpIABre1Q$><br><br>Abstract: The bacterial cell wall is important for survival and shape, and its biosynthetic mechanism is the target of beta-lactam antibiotics. The spread of resistant strains, however, has limited the usefulness of these drugs and calls for efforts towards studies of cell wall formation that could lead to the development of [...]
2024-03-18T23:44:37+00:00Stojanoff, Vivianhttps://www.jiscmail.ac.uk/cgi-bin/wa-jisc.exe?A2=CCP4BB;da2eb988.2403