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Hi Paul,
Thank you for answering! I am using concat_bvars to prepare my segmentations, but I am getting the aforementioned error message when I try to load it to the gui, as I am told to do in the fsl course.
Do you know why this error message is happening?
Thank you!
Paige
> On Jun 4, 2019, at 4:17 AM, paul mccarthy <[log in to unmask]> wrote:
> 
> Hi Paige,
> 
> concat_bvars is a preprocessing step needed to prepare sub-cortical
> segmentations for a group analysis.
> 
> I would recommend going through the FSL course material to familiarise
> yourself with FSL - there is a good overview of the sub-cortical
> analysis pipeline:
> 
> http://fsl.fmrib.ox.ac.uk/fslcourse/
> http://fsl.fmrib.ox.ac.uk/fslcourse/lectures/practicals/seg_struc/index.html#first
> 
> Cheers,
> 
> Paul
> 
> On 04/06/2019, Paige Oden <[log in to unmask]> wrote:
>> Hello! I am very new to fsl and I am stuck.
>> First, I'm not entirely sure what the output of concat is meant to be, but
>> it keeps coming out as a document that will not open. The command line I'm
>> using is:
>> 
>> concat_bvars c_to_p_to_pdi_R_Hipp.bvars MJF*C_first_R_Hipp.bvars
>> MJF*P_first_R_Hipp.bvars MJF*PCI_first_R_Hipp.bvars
>> 
>> Definitely not sure if that's what I'm supposed to be using, or if that's
>> what's supposed to be happening, but that's what it is.
>> 
>> Furthermore, when I try to load this concatenated file into my Higher Level
>> GLM gui, it says that "This" is an invalid command. I don't know what to do
>> about this because I don't know where 'This' is coming from.
>> 
>> Thank you!
>> 
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