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Dear Kevin,

thanks for uploading the data. I have been able to confirm your findings, and also seen that it is a problem that does not affect the GPU version. I’ll make sure that it is fixed for the 6.0.2 release.

Jesper

> On 27 Jun 2019, at 12:55, SUBSCRIBE FSL Kang Ik K. Cho <[log in to unmask]> wrote:
> 
> Dear Jesper,
> 
> We highly appreciate your time for this. I've uploaded the tar file to the given link.
> The tar file includes raw data, eddy 5.1.1 with repol & no repol and eddy 6.0.1 with repol & no repol.
> 
> *The dropout slice from the screen capture is at dwi volume 8, z=19.
> 
> Command that we used for eddy 6.0.1 without repol
> eddy_openmp --imain=subject.nii.gz --mask=subject_mask.nii.gz --index=index.txt --acqp=acqp.txt --bvecs=subject.bvec --bvals=subject.bval --data_is_shelled --out=eddy_6_no_option
> 
> Command that we used for eddy 6.0.1 with repol
> eddy_openmp --imain=subject.nii.gz --mask=subject_ask.nii.gz --index=index.txt --acqp=acqp.txt --bvecs=subject.bvec --bvals=subject.bval --data_is_shelled --repol --out=eddy_6_repol
> 
> Although this eddys were ran on a linux machine, the same issue is present for eddy 6.0.1 in my mac.
> (Please let me know if the uploading didn't go well)
> 
> Many thanks,
> Kevin
> 
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