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For the FSL installation, did you use any command line flags (e.g -V ) to select a specific version?

If not, then the installer likely installed the most recent version of FSL (v6.0.1).

Additionally, I think I see the problem.

For some reason, I am unsure as to why some of FSL’s binaries do not work on the WSL Ubuntu 18.

On my PC, I know that FSL v5.0.11 runs with no problems on WSL Ubuntu 16. I am unsure about FSL v6.0.0 and greater on WSL Ubuntu 16.

However, I think installing WSL Ubuntu 16, and then installing FSL might be your best option.

All the best,

--

Thank You for Your Time

Adebayo Braimah
Research Assistant III
Pediatric Neuroimaging Research Consortium
Imaging Research Center
Cincinnati Children's
3333 Burnet Avenue, MLC 5033
Cincinnati, OH 45229
E-mail: [log in to unmask]<mailto:[log in to unmask]>
Phone: +1 (513) 636-3946

From: FSL - FMRIB's Software Library <[log in to unmask]> on behalf of "Banik, Rana" <[log in to unmask]>
Reply-To: FSL - FMRIB's Software Library <[log in to unmask]>
Date: Monday, June 3, 2019 at 6:32 PM
To: "[log in to unmask]" <[log in to unmask]>
Subject: Re: [FSL] regarding FSL in windows

Dear Adebayo,
Please see the screenshot below:

[cid:image002.png@01D51A32.2A7279D0]

And I downloaded the FSL from the designated website using fslinstaller.py python file. Is there anyway to check that from terminal/shell?

Rana Banik
Graduate Student
Dept. of Biomedical Engineering<https://engineering.vanderbilt.edu/bme/>
Vanderbilt University<https://www.vanderbilt.edu/>
Contact: +16152756216

From: FSL - FMRIB's Software Library <[log in to unmask]> On Behalf Of Braimah, Adebayo (Adebayo)
Sent: Monday, June 3, 2019 5:06 PM
To: [log in to unmask]
Subject: Re: [FSL] regarding FSL in windows

Hi Rana,

What version of FSL are you using?

Additionally, what version of the WSL (windows subsystem linux) are you using (type `lsb_release -a` into the command line)?

All the best,

--

Thank You for Your Time

Adebayo Braimah
Research Assistant III
Pediatric Neuroimaging Research Consortium
Imaging Research Center
Cincinnati Children's
3333 Burnet Avenue, MLC 5033
Cincinnati, OH 45229
E-mail: [log in to unmask]<mailto:[log in to unmask]>
Phone: +1 (513) 636-3946

From: FSL - FMRIB's Software Library <[log in to unmask]<mailto:[log in to unmask]>> on behalf of "Banik, Rana" <[log in to unmask]<mailto:[log in to unmask]>>
Reply-To: FSL - FMRIB's Software Library <[log in to unmask]<mailto:[log in to unmask]>>
Date: Monday, June 3, 2019 at 5:43 PM
To: "[log in to unmask]<mailto:[log in to unmask]>" <[log in to unmask]<mailto:[log in to unmask]>>
Subject: [FSL] regarding FSL in windows

Dear Concern,
I have installed FSL in windows 10 using windows subsystem for Linux according to the instructions. But when I am trying to view/work with some files in both nii.gz and nii. Nifty files it shows the following error messages in the ubuntu shell.

[cid:image001.png@01D51A2A.0D3A97B0]

Please let me know how to proceed/troubleshoot and solve the problem.

Thanks in advance

Rana Banik
Graduate Student
Dept. of Biomedical Engineering<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fengineering.vanderbilt.edu%2Fbme%2F&data=02%7C01%7Crana.banik%40VANDERBILT.EDU%7C6d68169628b24b6c71cc08d6e871310b%7Cba5a7f39e3be4ab3b45067fa80faecad%7C0%7C0%7C636951970190493978&sdata=ZUEAdvdS4Vw4VrNO9q4hlG6I0sOifHb2jkZd9bVt1YY%3D&reserved=0>
Vanderbilt University<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.vanderbilt.edu%2F&data=02%7C01%7Crana.banik%40VANDERBILT.EDU%7C6d68169628b24b6c71cc08d6e871310b%7Cba5a7f39e3be4ab3b45067fa80faecad%7C0%7C0%7C636951970190503982&sdata=TNqSfvrBXJNXeOPpWzpo4JeCJTIMJvbXjJKn7%2B8i4Nw%3D&reserved=0>
Contact: +16152756216


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