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Hi Ahmet,

Thank you for your response. I think I was able to figure out the issue. I had a typo in the original GUI-generated design.fsf file where all conditions files that were blank had "set fmri(custom1)" instead of their actual number. In other words, if condition 9 had a blank timing file (i.e. the condition did not occur in that run), it was still listed as "set fmri(custom1)" instead of "set fmri(custom9)".

Now that I've fixed that, FEAT seems to be running.

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