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Hi fsl experts, 

I have a questions about running MELODIC FLS GLM. I have two groups of the same patients (paired). The patient group was scanned at two time points. 

I run the following:
Paired Two-Group Difference (Two-Sample Paired T-Test)

However,  I also have a healthy matched group that I would like to run. 

Are there any examples on how to enter this into the Melodic GLM. 

Would I enter all the three groups. Would I create an GLM for patients separate and one separate GLM for controls?

If I combine them all into a single GLM, would not the patients be weighted more? 

Please kindly advise. Thanks! Jasmin

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