On 8 Aug 2018, at 16:37, Navot Naor <[log in to unmask]> wrote:

Dear Janin,

I did, i got that error after running slices_summary

On Wed, Aug 8, 2018 at 11:25 AM Janine Bijsterbosch <[log in to unmask]> wrote:

Hi,

You need to run the following command (outside matlab) to generate summary pictures that Matlab will load:

slices_summary <group_maps> 4 $FSLDIR/data/standard/MNI152_T1_2mm <group_maps>.sum

This will generate a folder with png images. 

Best wishes,

Janine

On 8 Aug 2018, at 16:05, Navot Naor <[log in to unmask]> wrote:

Hi,

I am trying to run FSLNets on some resting state data, and i keep getting the following error:

nets_examples

Cannot open /mnt/hgfs/Bswift/nnaor/PhD/group_analysis/RSconcat.gica/groupmelodic.ica/melodic_IC.nii.gz.sum/0108.png for reading
/usr/local/fsl/bin/slices_summary: line 222:  6832 Segmentation fault      (core dumped) $thestring
error: imread: unable to find file /tmp/oct-SoGqfm.png
error: called from
  imageIO at line 71 column 7
  imread at line 106 column 30
  nets_nodepics at line 16 column 4
  nets_examples at line 35 column 1

How can i fix that?

Thank you

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-----
Dr Janine Bijsterbosch
Postdoctoral Researcher
FMRIB Centre, University of Oxford
John Radcliffe Hospital
Oxford, United Kingdom
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