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---

and sincosf in ctf.h with SINCOS and SINCOSF, and it should
work.

We use a macro depending on what version is available on each platform, but
apparently missed using this in ctf.h.

Cheers,

Erik

On Tue, Aug 7, 2018 at 1:52 PM Takanori Nakane <[log in to unmask]>
wrote:

> Hi Susan,
>
> I think you can comment out malloc_trim() from the code.
> It is only there to save memory.
>
> Please note that we do not officially support compilation on Mac OS X.
>
> Best regards,
>
> Takanori Nakane
>
> > Compiling Relion3 on MacBook (High Sierra 10.13.6), relion has pulled
> its
> > own fftw libraries:
> > using gcc versions between 5.4 and 7.3 / openmpi 3.1.1  consistently
> gives
> > two errors:
> > 1. cmake notes that function sincos not found but then says __sincos
> found
> > and completes, however make fails with function "sincos" not declared in
> > ctf.h .... if edit this to __sincos in ctf.h compilation proceeds past
> > this point
> > 2. make fails
> > /src/relion-3.0_beta/src/jaz/motion/motion_param_estimator.cpp: In
> member fu
> > nction ?void MotionParamEstimator::prepAlignment()?:
> > /src/relion-3.0_beta/src/jaz/motion/motion_param_estimator.cpp:499:5:
> error:
> >  ?malloc_trim? was not declared in this scope
> >      malloc_trim(0);
> >      ^~~~~~~~~~~
> > /src/relion-3.0_beta/src/jaz/motion/motion_param_estimator.cpp:499:5:
> note:
> > suggested alternative: ?malloc?
> >      malloc_trim(0);
> >      ^~~~~~~~~~~
> >      malloc
> > [ 56%] Building CXX object
> >
> src/apps/CMakeFiles/relion_lib.dir/__/jaz/motion/two_hyperparameter_fit.cpp.o
> > [ 56%] Building C object
> > src/apps/CMakeFiles/relion_lib.dir/__/jaz/d3x3/dsyev2.c.o
> > make[2]: ***
> >
> [src/apps/CMakeFiles/relion_lib.dir/__/jaz/motion/motion_param_estimator.cpp.o]
> > Error 1
> > make[2]: *** Waiting for unfinished jobs....
> > [ 57%] Building C object
> > src/apps/CMakeFiles/relion_lib.dir/__/jaz/d3x3/dsyevc3.c.o
> > make[1]: *** [src/apps/CMakeFiles/relion_lib.dir/all] Error 2
> > this seems to stink of some compiler mis-match as the same code compiles
> > happily on our cluster
> > any ideas?
> > thanks
> > Susan
> > Prof. Susan M. Lea,  FMedSci                      tel: +44 1865 275181
> >
> ------------------------------------------------------------------------------------------
> > Director of the Central Oxford Structural Microscopy and Imaging Centre
> &
> > Professor of Microbiology
> > Sir William Dunn School of Pathology, Oxford OX1 3RE Professorial Fellow
> @
> > WadhamCollege
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--
Erik Lindahl <[log in to unmask]>
Professor of Biophysics, Dept. Biochemistry & Biophysics, Stockholm
University
Science for Life Laboratory, Box 1031, 17121 Solna, Sweden

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