Dear FSL experts,

I would like to understand better the principle of eddy_correct: 

-in which way the eddy currents caused by motion are set apart from the eddy currents caused by fast switching diffusion-encoding gradients? 

-and then, how are the affine registration matrices reflecting motion computed  by eddy_correct considering the previous issues?

-does eddy_correct even computes these affine registration matrices(dwi.ecclog)? or is it another tool of dmri_motion? 


Thanks,

Loc Daumail
Graduate intern at Athinoula A. Martinos Center for Biomedical Imaging MGH/HST

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