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My problem is I need to change the dimension of the image .Now it is 39*305*305. ie number of slices 39. So i need to change the dimension as 305*305*39. I do X and Y rotation using M=[0 1 0;1 0 0;0 0 1] nii_reorient(“Sub.nii”,M) //SPM script then I do Y and Z rotation using M=[1 0 0;0 0 1;0 1 0] nii_reorient(“Sub.nii”,M) Now dimension is changed to 305X305x39 .but when I viewed this from MRIcron, axial one becomes sagittal. Please help me fsl5.0-fslorient Sub1.nii gives NEUROLOGICAL fsl5.0-fslinfo Sub1.nii gives data_type INT16 dim1 39 dim2 305 dim3 305 dim4 0 datatype 4 pixdim1 2.000000 pixdim2 1.250000 pixdim3 1.250000 pixdim4 0.000000 cal_max 0.0000 cal_min 0.0000 file_type NIFTI-1+ ######################################################################## To unsubscribe from the FSL list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1