Hi, I think there is a minor bug at the very end of FSL_ANAT. I am using version 5.0.11 and in the final step (SUB-CORTICAL STRUCTURE SEGMENTATION) there is the following:
Since this is literally the last real command in the script, it doesn't have much impact, however it does cause fsl_anat to exit with status 1 which was then causing another of my scripts to fail!
I can work around it easily, but looks like an straightforward fix for the next release.
Cheers,
Martin
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