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Hi Carlotta, By default FEAT will calculate registrations between the three spaces (functional, structural, standard), but it doesn't apply the registrations because, as I mentioned, the GLM analysis is performed in functional space. If you end up doing your group analysis in FEAT, then all of the statistic images will be transformed into standard space for you, so you don't need to do anything extra. If you want to view first-level (i.e. single-subject) stats/data in standard space, then you need to manually transform them. For this you would need to use the applywarp command-line tool. Cheers, Paul On 12 June 2018 at 10:05, Carlotta Fabris <[log in to unmask]> wrote: > Thanks Paul! > > I did the registration in the preprocessing pipline in FEAT, but if you > say that it leaves the images in another space, I will keep them that way > and do the GLM and then visualize them. Is it the best option or I could > just perform the registration using flirt or ApplyXFM? > > Thank you, > Carlotta. > > ######################################################################## > > To unsubscribe from the FSL list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1 > ######################################################################## To unsubscribe from the FSL list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=FSL&A=1