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Sorry for the late answer.
It's the mask option and I'm using the output of randomise for TBSS data.

Best,
Martin

2017-08-22 16:44 GMT+02:00 Matthew Webster <[log in to unmask]>:

> Hello,
> Are you using a mask ( -m ) option or co-ordinate lookups ( -c ) option?
>
> Kind Regards
> Matthew
> --------------------------------
> Dr Matthew Webster
> FMRIB Centre
> John Radcliffe Hospital
> University of Oxford
>
> On 22 Aug 2017, at 15:34, Martin Domin <[log in to unmask]
> <[log in to unmask]>> wrote:
>
> Sadly it doesn't work either. The same seg fault code…
>
> Best,
> Martin
>
> 2017-08-22 13:18 GMT+02:00 Matthew Webster <[log in to unmask]>
> :
>
>> Hello Martin,
>>                     Can you modify this section in $FSLDIR/bin/atlasquery:
>>
>> if [ `uname` = "Darwin" ] ; then
>>   DYLD_LIBRARY_PATH=${FSLDIR}/bin/fslview.app/Contents/Frameworks
>>   export DYLD_LIBRARY_PATH
>>   ${FSLDIR}/bin/atlasquery_bin "$1" "$2" "$3" "$4" "$5" "$6" "$7" "$8"
>> "$9" "$10”
>> fi
>>
>> to:
>>
>> if [ `uname` = "Darwin" ] ; then
>>   DYLD_LIBRARY_PATH=${FSLDIR}/bin/fslview.app/Contents/Frameworks
>>   DYLD_FALLBACK_LIBRARY_PATH=/opt/X11/lib
>>   export DYLD_LIBRARY_PATH DYLD_FALLBACK_LIBRARY_PATH
>>   ${FSLDIR}/bin/atlasquery_bin "$1" "$2" "$3" "$4" "$5" "$6" "$7" "$8"
>> "$9" "$10”
>> fi
>>
>> and let me know if that fixes the issue?
>>
>> Kind Regards
>> Matthew
>>
>> --------------------------------
>> Dr Matthew Webster
>> FMRIB Centre
>> John Radcliffe Hospital
>> University of Oxford
>>
>> > On 22 Aug 2017, at 11:17, Martin Domin <[log in to unmask]> wrote:
>> >
>> > Hi Mark,
>> >
>> > thanks for the fast answer! The problem is, autoaq is using atlasquery,
>> too, so the same segmentation faults are happening here.
>> > And, the problem existed with the pre-FSLeyes version, too. I hoped, an
>> update would solve it, but it seems to be a more severe issue.
>> > Could there be an incompatibility of the dynlibs used by atlasquery?
>> Version problems in QT or associated libraries?
>> >
>> > Best,
>> > Martin
>> >
>> > 2017-08-22 11:47 GMT+02:00 Mark Jenkinson <[log in to unmask]
>> >:
>> > Hi,
>> >
>> > Others have also reported this and it seems to be related to the change
>> from FSLView to FSLeyes.  I recommend that you try the new tool autoaq - as
>> that should do what you need with masks.  If you want to use a coordinate,
>> then just prepare an input mask for that with std2imgcoord and fslmaths
>> with the -roi option (or use FSLeyes interactively).
>> >
>> > All the best,
>> >         Mark
>> >
>> >
>> > > On 22 Aug 2017, at 10:26, Martin Domin <[log in to unmask]>
>> wrote:
>> > >
>> > > Hello,
>> > >
>> > > as the subject already mentions the problem, I'm getting a
>> segmentation fault during the use of atlasquery. It happens during the
>> query step, not while e.g. requesting the available atlases.
>> > > I'm working on a MacPro, 10.10.5 (Yosemite) with the most current
>> version of FSL (updated yesterday) - build 416.
>> > >
>> > > Are there perhaps any ideas that could help identifying the cause?
>> Thank you in advance!
>> > >
>> > > Best,
>> > > Martin
>> >
>>
>
>
>