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Hi, You could do this with fsl2ascii On Fri, Aug 25, 2017 at 15:53 John anderson < [log in to unmask]> wrote: > Hi FSL experts, > Is there any way to push fslstats to output the mean intensity, within > each voxel in the brain, into a text file. > > If I run "fslstats image -R > intensity" this will out min/max intensity > for all the voxels. I want the intensity for every voxels so I can make a > histogram of it. How can FSL handle this issue? > > Thanks in advance > John > -- Niels Bergsland Integration Director / Research Assistant Professor of Neurology Buffalo Neuroimaging Analysis Center / University at Buffalo 100 High St. Buffalo NY 14203 [log in to unmask]