Hello,
I am refining a few datasets of my protein of interest (ERAP1) bound to various inhibitors, and I repeatedly observe a positive density peak near an asparagine. I first thought this might be a glycan, but this site does not fit the canonical N-linked glycosylation motif (this site sequence is NKL). Previous crystal structures of this protein do not identify any ligand at this position.
https://www.dropbox.com/sh/2wdax5uqlb1f4m3/AABQlGK2_mgibtqnm61E-7o0a?dl=0
www.dropbox.com
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I would appreciate any suggestions of what this density might be. Thank you for your help.
Best,
Zach Maben
Stern Lab
Pathology Department
University of Massachusetts Medical School