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Thank you.

Can you suggest how to get output file called T1_restore.nii from bet command?

I need it on my next step:

robustfov -i T1_restore.nii -r robT1_restore.nii





On Fri, Apr 14, 2017 at 6:05 AM, Matthew Webster <[log in to unmask]> wrote:
Hello,
The format is:

Usage:    bet <input> <output> [options]

so your command should look something like:

bet T1.nii myOutputImage -B

hope this helps,
Kind Regards
Matthew

On 14 Apr 2017, at 01:01, Napapon Sailasuta <[log in to unmask]> wrote:

Hi,

I used that option numerous times

Now I got this

Napapons-MacBook-Pro:qsm-image poms$ bet T1.nii -B
error : two first arguments should be input and output names, see bet -h for help
/bin/rm: illegal option -- B
usage: rm [-f | -i] [-dPRrvW] file ...
       unlink file
Napapons-MacBook-Pro:qsm-image poms$ 

Thanks
Pom

On Thu, Apr 13, 2017 at 1:53 PM, Eelke Visser <[log in to unmask]> wrote:
Hi Napapon,

For bet the options go at the end, i.e.

bet T1 -B

Hope that helps!

Cheers,
Eelke


-----Original Message-----
From: FSL - FMRIB's Software Library [mailto:[log in to unmask]] On Behalf Of Napapon Sailasuta
Sent: 14 April 2017 00:49
To: [log in to unmask]
Subject: [FSL] reinstall fsl

Hi,

I am new to FSL, please comment:

All of the sudden I am getting

bet -B T1
Error: input image -B not valid

Do not really know what is happening.
Should I reinstall FSL??

thanks