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I'll take a look at that option later today. Thanks for the guidance. On Fri, Sep 5, 2014 at 7:27 AM, Jesper Andersson < [log in to unmask]> wrote: > Oh, > > you’re right. I has managed to make it’s way into the release already then > ;-) > > So, that would be the way to do it. Make sure that you have duplicated all > diffusion directions with opposing PE-directions and use —resamp=lsr. > > > what is then the option --resamp lsr in eddy ? > > > > For the connectom data their acquired 288*2 raw data but the preprocess > data have only 288 volume so I guess they did a pairwise restoration... no > ? may be they have a special releas of eddy ? > > When the pipeline for the HCP was finalised we didn’t yet have the lsr > option, so the HCP data is actually resampled with the jac option and then > simply averaged. > > Jesper > > > > > Many thanks > -- Nicholas D. Davenport, PhD Principal Investigator, COMBAT Study Minneapolis VAHCS Assistant Professor, Department of Psychiatry University of Minnesota