Hi Ben,
The "Killed" message is not good. Are you running this on a cluster? Could it have exceeded the time limit for your queue? This can happen if you have particularly large/high-resolution images.
If that is not the cause then let us know more details about the version of FSL, your OS, and the files you are using.
All the best,
Mark
On 7 Jan 2014, at 22:54, Ben Allen <[log in to unmask]> wrote:
> Hello all,
>
> I am having a problem with tbss_non_FA MD. When I run the script, it creates the all_MD.nii.gz file, but then gives me the error below, and does not create all_MD_skeletonised.
>
> Any idea what I might have done wrong?
>
> merging all upsampled MD images into single 4D image
> projecting all_MD onto mean FA skeleton
> /usr/local/fsl/bin/tbss_non_FA: line 104: 5972 Killed ${FSLDIR}/bin/tbss_skeleton -i mean_FA -p $thresh mean_FA_skeleton_mask_dst ${FSLDIR}/data/standard/LowerCingulum_1mm all_FA all_${ALTIM}_skeletonised -a all_$ALTIM
> now run stats - for example:
> randomise -i all_MD_skeletonised -o tbss_MD -m mean_FA_skeleton_mask -d design.mat -t design.con -n 500 --T2 -V
> (after generating design.mat and design.con)
