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Hi,

It seems I didn't have the "data" file named as such.

Thank you!

Irina

From: Stamatios Sotiropoulos <[log in to unmask]>
To: [log in to unmask]
Sent: Friday, April 26, 2013 8:51 PM
Subject: Re: [FSL] bedpostx error

you need to provide as input to bedpostx a folder, in which the following files are expected (named exactly as):

data

nodif_brain_mask

bvals

bvecs

Cheers

Stam

On 26 Apr 2013, at 07:39, Serbu Irina wrote:

Dear FSL experts,

I tried to use FDT on a dataset and when I got to the bedpostx step, I got the following message: "data not found". I copied the entire sequence below:

switching from /usr/local/fsl/date to /usr/local/fsl/date

bedpostx /usr/local/fsl/date/dti20 -n 2 -w 1 -b 1000

/usr/local/fsl/bin/bedpostx /usr/local/fsl/date/dti20 -n 2 -w 1 -b 1000

subjectdir is /usr/local/fsl/date/dti20

/usr/local/fsl/date/dti20/data not found

bedpostx_datacheck didn't return anything in the terminal.

Also, I have a problem with fslview. It doesn't show anything but a gray screen. I attached the screenshot so you can see the exact problem.

Thanks in advance,
Irina Serbu

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