However, I still have problems using FSL in conjunction with Freesurfer. I am getting still an error when using freesurfer's mkbrainmask-sessI did that and added the source . /etc/fsl/5.0/fsl.sh to my .bashsc file. Which fixes the fsl5.0- issue.
/usr/share/fsl/5.0/bin/bet2: error while loading shared libraries: libmeshclass.so: cannot open shared object file: No such file or directoryOn Wed, Apr 17, 2013 at 12:26 AM, Michael Hanke <[log in to unmask]> wrote:Hi,On Tue, Apr 16, 2013 at 10:26 PM, Corinna Bauer <[log in to unmask]> wrote:
In order to get fsl5.0 to work on my Ubuntu 12.04 OS, I need to type fsl5.0- prior to any command (e.g. fsl5.0-fsl, fsl5.0-bet2, etc). Otherwise I get errors.Please runman fslin a terminal. The manpage has instruction on how to set up FSL properly. Basically just like setting up FSL on other systems by sourcing the config file.Michael