This is great news!
Thanks for your help,
I assume you are running on an Ubuntu/Debian system.
If so, try changing the first line of the script to:
Oh, and the script is now official, as of FSL 5.0.2. :)
All the best,
On 19 Apr 2013, at 16:40, "Patai, Zita" <[log in to unmask]> wrote:
I realize that this script is not ‘official’, but since it exists I was trying to use it as I have 3 acquisitions per subject.
I am using it as: fdt_rotate_bvecs original_bvecs output ecc_logfile
and get this error (I am only showing the last bit, but this exists for all images in the series, which is 63):
/usr/share/fsl/5.0/bin/fdt_rotate_bvecs: 29: [: processing dti_ec_tmp0062: unexpected operator
/usr/share/fsl/5.0/bin/fdt_rotate_bvecs: 67: /usr/share/fsl/5.0/bin/fdt_rotate_bvecs: let: not found
I can’t seem to get around this error, and I have checked my ecc_logfile and it looks fine. Also, it creates an output file, but it only has 3 zeros in it.
Please let me know if there is a solution!
Eva Zita Patai
Postdoctoral Research Associate
UCL, Institute of Child Health
020 7905 2730