Dear Meng-chuan,

I'd say that it doesn't really make sense to use a template resampled at 1mm -- see Jesper's answer on this:

All you need to do is to resample your final, corrected results at the end of the process, not during the pre-processing steps (

Hope this helps,


GwenaŽlle Douaud, PhD
MRC Career Development Fellow

FMRIB Centre, University of Oxford
John Radcliffe Hospital, Headington 
OX3 9DU  Oxford  UK
Tel: +44 (0) 1865 222 523 
Fax: +44 (0) 1865 222 717

 From: Meng-Chuan Lai <[log in to unmask]>
Subject: [FSL] change default voxel size when using fsl-vbm

Date: 28 March 2013 18:28:10 GMT

To: <[log in to unmask]>

Reply-To: FSL - FMRIB's Software Library <[log in to unmask]>

Dear all,

Could anyone advise the way to change the default voxel-size when 
generating the custom template and modulated maps when using fsl-vbm? We
 would like to generate images in 1mm isotropic and are not sure how 
this should be appropriately done.

Thank you very much.