Print

Print
Hi Rosalia

I am having the same problem.
Can you send me the commandline that solved your problem?

Shantanu

From: Rosalia Dacosta <[log in to unmask]>
To: [log in to unmask]
Sent: Monday, 11 June 2012 1:32 PM
Subject: Re: [FSL] Applywarp problems T1.to.T2.mat

Ok,

No worries. Taking into account it is a coregistration because T1 and T2 are of the same subject, in native space, I have used flirt with the -init option (for my matrix transformation) and it has worked. Anyway I post this in the mailing in order to see if it's ok and for helping if someone has the same problem.

All the best,

Rosalia.

2012/6/11 Rosalia Dacosta <[log in to unmask]>
Dear Fsl experts,

I am trying to make a transformation between aal template and T2 acquisition in native space using my T1.to.T2.mat (obtained with flirt) and using applywarp command. Now, I am not using warp and matrix at the same command (twice! as Wolf and Mark told me), just only the transformation matrix,...but I am having problems with my results: the images seem moved and cutted...

Any suggestion would be very appreciated.

Best regards,

Rosalia.





--

Saludos,

Rosalia Dacosta Aguayo
Clinical Neuropsychologist
Department of Psychobiology and Clinical Psychiatry
University of Barcelona
Pg. Vall d'Hebron 171 08035
Barcelona, Catalonia, Spain
+034630077325
+034937870518