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Thanks Stam! Another question for everyone - after running Bedpost, this error came up: /usr/local/fsl/bin/bedpostx: line 262: kill: (61932) - No such process However, the files were still generated. What does the error mean, then? Thanks in advance! Crystal On Mon, Jun 11, 2012 at 10:48 AM, Stamatios Sotiropoulos < [log in to unmask]> wrote: > ** > Hi Crystal > > This has to do with a monitor that runs within the bedpostX script. If you > have not received any error messages, processing should have finished fine. > If you are concerned, please check the output and make sure that everything > looks OK. > > Cheers > Stam > > > ----- Original Message ----- > *From:* Crystal Zhou <[log in to unmask]> > *To:* [log in to unmask] > *Sent:* Monday, June 11, 2012 5:43 PM > *Subject:* [FSL] BedpostX - skipped slices > > Hello FSL experts, > > While running BedpostX, I noticed an irregularity in how each slice was > being processed. Sometimes each slice is processed three times, sometimes > twice, sometimes once, and sometimes not at all. And sometimes, oddly > enough, FSL does not show any error message despite this. > > Example segment: > > 0 slices processed > 0 slices processed > 0 slices processed > 1 slices processed > 1 slices processed > 2 slices processed > 2 slices processed > 2 slices processed > 3 slices processed > 3 slices processed > 3 slices processed > 4 slices processed > 4 slices processed > 5 slices processed > 5 slices processed > 5 slices processed > 6 slices processed > 6 slices processed > 6 slices processed > 7 slices processed > 7 slices processed > 7 slices processed > 8 slices processed > 8 slices processed > 8 slices processed > 9 slices processed > 9 slices processed > 10 slices processed > 10 slices processed > 10 slices processed > 12 slices processed > 12 slices processed > All slices processed > Done! > > Thank you in advance for your help! > > Crystal > >