Dear Michael,

sudo apt-get install fsl-feeds worked but the test failed again:

FSL Evaluation and Example Data Suite v4.1.9

start time = Mi 11. Apr 22:38:24 CEST 2012
hostname = ubuntu
os = Linux ubuntu 2.6.32-38-generic #83-Ubuntu SMP Wed Jan 4 11:13:04 UTC 2012 i686 GNU/Linux


/bin/rm -rf /tmp/fsl-selftest.IHmioD/results ; mkdir /tmp/fsl-selftest.IHmioD/results


Starting SIENAX (including testing BET and FLIRT and FAST) at Mi 11. Apr 22:38:24 CEST 2012
checking error on BET:
% error = 0.0
checking error on FLIRT:
% error = 0.03
checking error on FAST:
checking error on single-image binary segmentation:
No output image created
Warning - test failed!
checking error on partial volume images:
No output image created
Warning - test failed!
No output image created
Warning - test failed!
No output image created
Warning - test failed!
checking error on SIENAX volume outputs:
% error = 42.5
Warning - test failed!
% error = 2.65
Warning - test failed!
% error = 53.06
Warning - test failed!
% error = 42.64
Warning - test failed!
% error = 95.71
Warning - test failed!

Warning - not all tests passed

end time = Mi 11. Apr 22:47:24 CEST 2012

__________________________________

I found the working directory:
Using /tmp/fsl-selftest.IHmioD as working directory

And I tried cat /tmp/fsl-selftest.IHmioD/results/LOG:

/usr/share/fsl/4.1/bin/imcp /tmp/fsl-selftest.IHmioD/data/structural /tmp/fsl-selftest.IHmioD/results/structural

cd /tmp/fsl-selftest.IHmioD/results ; /usr/share/fsl/4.1/bin/sienax structural -d -r
** ERROR (nifti_image_read): failed to find header file for 'I_stdmaskbrain_pve_1'
** ERROR: nifti_image_open(I_stdmaskbrain_pve_1): bad header info
ERROR: failed to open file I_stdmaskbrain_pve_1
Cannot open volume I_stdmaskbrain_pve_1 for reading!
** ERROR (nifti_image_read): failed to find header file for 'I_stdmaskbrain_pve_1_segperiph'
** ERROR: nifti_image_open(I_stdmaskbrain_pve_1_segperiph): bad header info
ERROR: failed to open file I_stdmaskbrain_pve_1_segperiph
ERROR: Could not open image I_stdmaskbrain_pve_1_segperiph
Image Exception : #22 :: Failed to read volume I_stdmaskbrain_pve_1_segperiph
dc: stack empty
dc: stack empty
dc: stack empty
dc: stack empty
** ERROR (nifti_image_read): failed to find header file for 'I_stdmaskbrain_pve_0'
** ERROR: nifti_image_open(I_stdmaskbrain_pve_0): bad header info
ERROR: failed to open file I_stdmaskbrain_pve_0
Cannot open volume I_stdmaskbrain_pve_0 for reading!
** ERROR (nifti_image_read): failed to find header file for 'I_stdmaskbrain_pve_0_segvent'
** ERROR: nifti_image_open(I_stdmaskbrain_pve_0_segvent): bad header info
ERROR: failed to open file I_stdmaskbrain_pve_0_segvent
ERROR: Could not open image I_stdmaskbrain_pve_0_segvent
Image Exception : #22 :: Failed to read volume I_stdmaskbrain_pve_0_segvent
dc: stack empty
dc: stack empty
dc: stack empty
dc: stack empty
** ERROR (nifti_image_read): failed to find header file for 'I_stdmaskbrain_pve_1'
** ERROR: nifti_image_open(I_stdmaskbrain_pve_1): bad header info
ERROR: failed to open file I_stdmaskbrain_pve_1
ERROR: Could not open image I_stdmaskbrain_pve_1
Image Exception : #22 :: Failed to read volume I_stdmaskbrain_pve_1
dc: stack empty
dc: stack empty
dc: stack empty
dc: stack empty
** ERROR (nifti_image_read): failed to find header file for 'I_stdmaskbrain_pve_2'
** ERROR: nifti_image_open(I_stdmaskbrain_pve_2): bad header info
ERROR: failed to open file I_stdmaskbrain_pve_2
ERROR: Could not open image I_stdmaskbrain_pve_2
Image Exception : #22 :: Failed to read volume I_stdmaskbrain_pve_2
dc: stack empty
dc: stack empty
dc: stack empty
dc: stack empty
** ERROR (nifti_image_read): failed to find header file for 'I_stdmaskbrain_seg'
** ERROR: nifti_image_open(I_stdmaskbrain_seg): bad header info
ERROR: failed to open file I_stdmaskbrain_seg
ERROR: Could not open image I_stdmaskbrain_seg
Image Exception : #22 :: Failed to read volume I_stdmaskbrain_seg
terminate called after throwing an instance of 'RBD_COMMON::BaseException'
Aborted
** ERROR (nifti_image_read): failed to find header file for 'I_render'
** ERROR: nifti_image_open(I_render): bad header info
ERROR: failed to open file I_render
ERROR: Could not open image I_render
Image Exception : #22 :: Failed to read volume I_render
terminate called after throwing an instance of 'RBD_COMMON::BaseException'
Aborted

 Cannot open grIa.png for reading
Segmentation fault
/bin/rm: Entfernen von „grI?.???“ nicht möglich: Datei oder Verzeichnis nicht gefunden
** ERROR (nifti_image_read): failed to find header file for 'I_stdmaskbrain_pve_1_segperiph'
** ERROR: nifti_image_open(I_stdmaskbrain_pve_1_segperiph): bad header info
ERROR: failed to open file I_stdmaskbrain_pve_1_segperiph
ERROR: Could not open image I_stdmaskbrain_pve_1_segperiph
Image Exception : #22 :: Failed to read volume I_stdmaskbrain_pve_1_segperiph
terminate called after throwing an instance of 'RBD_COMMON::BaseException'
Aborted
** ERROR (nifti_image_read): failed to find header file for 'I_stdmaskbrain_pve_0_segvent'
** ERROR: nifti_image_open(I_stdmaskbrain_pve_0_segvent): bad header info
ERROR: failed to open file I_stdmaskbrain_pve_0_segvent
ERROR: Could not open image I_stdmaskbrain_pve_0_segvent
Image Exception : #22 :: Failed to read volume I_stdmaskbrain_pve_0_segvent
terminate called after throwing an instance of 'RBD_COMMON::BaseException'
Aborted
** ERROR (nifti_image_read): failed to find header file for 'I_periph_render'
** ERROR: nifti_image_open(I_periph_render): bad header info
ERROR: failed to open file I_periph_render
ERROR: Could not open image I_periph_render
Image Exception : #22 :: Failed to read volume I_periph_render
terminate called after throwing an instance of 'RBD_COMMON::BaseException'
Aborted

 Cannot open grIa.png for reading
Segmentation fault
** ERROR (nifti_image_read): failed to find header file for 'I_vent_render'
** ERROR: nifti_image_open(I_vent_render): bad header info
ERROR: failed to open file I_vent_render
ERROR: Could not open image I_vent_render
Image Exception : #22 :: Failed to read volume I_vent_render
terminate called after throwing an instance of 'RBD_COMMON::BaseException'
Aborted

 Cannot open grIa.png for reading
Segmentation fault
/bin/rm: Entfernen von „grI?.???“ nicht möglich: Datei oder Verzeichnis nicht gefunden

Finished. The SIENAX report can be viewed by pointing your web browser at:
file:/tmp/fsl-selftest.IHmioD/results/structural_sienax/report.html
Estimated normalised brain volume (NBV) =
2.38


Thank you for your help!!

Christina