Hello,

Firstly, sorry for my English.

I am trying to realign, coregister and normalize brains rat.  I would like develop a script using spm_jobman command. When I create it, what are the struct fields  needed for execute the script? For example:

matlabbatch{1}.spm.spatial.normalise.estwrite.eoptions.template = {‘filetemplate’};

matlabbatch{1}.spm.spatial.normalise.estwrite.eoptions.weight = '';

matlabbatch{1}.spm.spatial.normalise.estwrite.eoptions.smosrc = 0;

matlabbatch{1}.spm.spatial.normalise.estwrite.eoptions.smoref = 8;

matlabbatch{1}.spm.spatial.normalise.estwrite.eoptions.regtype = 'mni';

matlabbatch{1}.spm.spatial.normalise.estwrite.eoptions.cutoff = 20;

matlabbatch{1}.spm.spatial.normalise.estwrite.eoptions.nits = 16;

matlabbatch{1}.spm.spatial.normalise.estwrite.eoptions.reg = 1;

matlabbatch{1}.spm.spatial.normalise.estwrite.roptions.preserve = 0;

matlabbatch{1}.spm.spatial.normalise.estwrite.roptions.bb = [NaN NaN NaN; NaN NaN NaN];

matlabbatch{1}.spm.spatial.normalise.estwrite.roptions.vox = [2 2 2];

matlabbatch{1}.spm.spatial.normalise.estwrite.roptions.interp = 1;

matlabbatch{1}.spm.spatial.normalise.estwrite.roptions.wrap = [0 0 0];

matlabbatch{1}.spm.spatial.normalise.estwrite.roptions.prefix = 'w';

spm_jobman(‘run’, matlabbatch);

where can I find a tutorial that describes all the fields for realign, coregister and normalize and how does the script create?

matlabbatch{1}.spm.spatial.normalise...., matlabbatch{1}.spm.spatial.coreg...., matlabbatch{1}.spm.spatial.realign....

Thank you in advance

Alex