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Thanks Paul, You think of everything, if only I always knew how to find it... I added this line to my key bindings: (add-key-binding "Goodbye weak waters" "z" (lambda () (delete-checked-waters-baddies 0 300 0.8 2.0 3.8 0 0 1))) which followed from your post with arguments of imol, b factor limit, sigma level limit, min dist, max dist, part_occ_contact_flag, zero_occ_flag, logical_and_or_flag So as advertised this seems to remove mostly the weak waters below 0.8 sigma of the (current?) map. And I was generous on the B factors and the distances since often I find that a weak water near a good one can taint the good one by its proximity, so best to remove the weak before checking the remaining for distance. Which brings to mind is there a "check-checked-waters-baddies" that I could key bind? Thanks a bunch, Seth On Fri, Jun 3, 2011 at 4:37 PM, Paul Emsley <[log in to unmask]>wrote: > On 03/06/11 23:11, Seth Harris wrote: > >> Hi all, >> >> I often use the Check/Delete waters dialog to delete only those waters >> below 0.8 level in the map. I do this often enough that it is high time to >> find/create a script version, preferably even something I could launch from >> the command line, or barring that maybe could generate a single-click button >> on the main menu/control panel. >> >> Would that be as simple as falling off a log for some out there to give me >> pointers or a template to work from? Basically it is scripting whatever that >> "Validate > Check/Delete waters" dialog is doing. >> >> Thanks so much, >> Seth >> >> > Maybe this will be of some use? > > > http://lmb.bioch.ox.ac.uk/coot/doc/coot/delete_002dchecked_002dwaters_002dbaddies.html#delete_002dchecked_002dwaters_002dbaddies > > If you need some help working that up into a menu item we can do that > tomorrow. > > Paul. > > > > >