Dear Khan,

There's a software package dedicated to the processing of resting state fMRI 
data (Rest,

The software is designed for human subjects, but I think it is feasible to 
replace the MNI template by a rat brain template, which may do the trick.

Best regards

Yun Lin
Physician, Master Candidate
Department of Radiology, Southwest Hospital
3rd Military Medical University, Chongqing, China

Phone: +86 150 2312 2673
MSN: [log in to unmask]
Skype: lin.yun83

From: hekmatyar
Sent: Thursday, May 12, 2011 8:14 PM
To: [log in to unmask]
Subject: Re: [SPM] SPM resting state

Hello SPM experts
Is there anyway, I can do detrending and low pass filtering in the SPM for
resting state functional connectivity measurements for my rat brain? Is
there any procedure or method available in SPM? Please suggest me if you
have come across.

Khan Hekmatyar PhD
Bioimaging Research Center.
University of Georgia,
Athens, GA