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Thanks, but after removing = and <> it says: --in: Missing non-optional argument! and no calculation is made any idea? best regards. 2011/4/18 MCLAREN, Donald <[log in to unmask]> > And also remove the = > > > Best Regards, Donald McLaren > ================= > D.G. McLaren, Ph.D. > Postdoctoral Research Fellow, GRECC, Bedford VA > Research Fellow, Department of Neurology, Massachusetts General Hospital > and Harvard Medical School > Office: (773) 406-2464 > ===================== > This e-mail contains CONFIDENTIAL INFORMATION which may contain PROTECTED > HEALTHCARE INFORMATION and may also be LEGALLY PRIVILEGED and which is > intended only for the use of the individual or entity named above. If the > reader of the e-mail is not the intended recipient or the employee or agent > responsible for delivering it to the intended recipient, you are hereby > notified that you are in possession of confidential and privileged > information. Any unauthorized use, disclosure, copying or the taking of any > action in reliance on the contents of this information is strictly > prohibited and may be unlawful. If you have received this e-mail > unintentionally, please immediately notify the sender via telephone at (773) > 406-2464 or email. > > > On Mon, Apr 18, 2011 at 2:45 PM, MCLAREN, Donald <[log in to unmask] > > wrote: > >> Remove the < and > >> >> Best Regards, Donald McLaren >> ================= >> D.G. McLaren, Ph.D. >> Postdoctoral Research Fellow, GRECC, Bedford VA >> Research Fellow, Department of Neurology, Massachusetts General Hospital >> and Harvard Medical School >> Office: (773) 406-2464 >> ===================== >> This e-mail contains CONFIDENTIAL INFORMATION which may contain PROTECTED >> HEALTHCARE INFORMATION and may also be LEGALLY PRIVILEGED and which is >> intended only for the use of the individual or entity named above. If the >> reader of the e-mail is not the intended recipient or the employee or agent >> responsible for delivering it to the intended recipient, you are hereby >> notified that you are in possession of confidential and privileged >> information. Any unauthorized use, disclosure, copying or the taking of any >> action in reliance on the contents of this information is strictly >> prohibited and may be unlawful. If you have received this e-mail >> unintentionally, please immediately notify the sender via telephone at (773) >> 406-2464 or email. >> >> >> >> On Mon, Apr 18, 2011 at 2:44 PM, Ignacio Letelier <[log in to unmask]>wrote: >> >>> Thanks reza >>> >>> I tried to do the suggested analysis but i received the following error >>> message >>> >>> [fsl@localhost cope1.feat]$ cluster --in= <subject1_mask.nii.gz> >>> --thresh= <2.3> >>> >>> bash: syntax error near unexpected token `newline' >>> >>> It seems there is a mistake in the thresh input. >>> >>> any help? >>> >>> thanks a lot. >>> >>> >>> 2011/4/18 Reza Salimi <[log in to unmask]> >>> >>>> Dear Ignacio, >>>> If you use the command 'cluster', it can provides you with an output >>>> volume in which each voxel has value that equals the size of the cluster it >>>> belongs to. >>>> Using that volume then, if voxel i belongs to cluster j, its value will >>>> be S_j (i.e., the size of the cluster it belongs to). >>>> Please see the manual for 'cluster'. >>>> Cheers >>>> >>>> >>>> On Mon, Apr 18, 2011 at 6:34 PM, Ignacio Letelier < >>>> [log in to unmask]> wrote: >>>> >>>>> Hi all >>>>> >>>>> I would like to ask if anyone knows how to customize a VOI to measure >>>>> a specific >>>>> cluster size. Is there something like giving a couple of coordinates as >>>>> an entry and get the number of voxel per cluster? >>>>> >>>>> Thanks in advance. >>>>> >>>>> Best regards. >>>>> >>>>> >>>>> -- >>>>> Ignacio Letelier Aguirre >>>>> Ingeniero Civíl Biomédico >>>>> Clinica Santa María. >>>>> Teléfono: 97139955 >>>>> >>>>> >>>> >>>> >>>> -- >>>> Reza Salimi-Khorshidi DPhil MSc BSc >>>> Analysis Group, FMRIB Centre of the University of Oxford >>>> Oxford-Man Institute for Quantitative Finance, University of Oxford >>>> >>>> Email: [log in to unmask]; Tel: +44 (0) 1865 222704; Fax: +44 (0)1865 >>>> 222717 >>>> Address: FMRIB Centre, John Radcliffe Hospital, Oxford OX3 9DU, UK >>>> >>> >>> >>> >>> -- >>> Ignacio Letelier Aguirre >>> Ingeniero Civíl Biomédico >>> Clinica Santa María. >>> Teléfono: 97139955 >>> >>> >> > -- Ignacio Letelier Aguirre Ingeniero Civíl Biomédico Clinica Santa María. Teléfono: 97139955