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I have attached my latest version of fsl_sub for the Wash U MOAB/TORQUE cluster. You will have to do some configuring for your own cluster, but this should at least be a start. Peace, Matt. -----Original Message----- From: FSL - FMRIB's Software Library [mailto:[log in to unmask]] On Behalf Of Nicola Sent: Saturday, March 19, 2011 6:03 PM To: [log in to unmask] Subject: [FSL] Editing fsl_sub for PBS Hello, I am fairly new to FLS and would like to run the the various scripts (especially TBSS-related) on a PBS cluster (see below for syntax and cluster info). Unfortunately I do not have access to the system administrator, so I have to edit edit fsl_sub myself (I am installing/running fsl within a user shell). Would anyone be able to point be in the right direction (or even share an edited fsl_sub script)? Thank you very much in advance, Nicola ___________________________________ Cluster info: A typical MPI parallel job submission on our cluster would look like this: qsub -q queue_name jobfile.sh Where jobfile.sh would be something like: #!/bin/sh #PBS -N myjob (set job name) #PBS -o myjob.log (set job log filename) #PBS -j oe (merge stdout and stderr in myjob.log) #PBS -l walltime=10:00:00 (request 10hr time) #PBS -l select=24:ncpus=1 (request 24 cpus) #PBS -l place=free (allow cpus to be on different nodes) cd $PBS_O_WORKDIR (chdir to submit directory) mpirun -np 24 ./my_application (launch application)