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Dear Gwenaelle, Great news! Thank you! Best, Aga On 8/13/09 5:21 PM, "Gwenaëlle DOUAUD" <[log in to unmask]> wrote: > Hi Aga, > > you just need to name your successful brain extractions "*_struc_brain.nii" > (none of the mask, skull and cut images are used in the following). > > Cheers, > Gwenaelle > > --- En date de : Jeu 13.8.09, Agnieszka Burzynska > <[log in to unmask]> a écrit : > >> De: Agnieszka Burzynska <[log in to unmask]> >> Objet: [FSL] Fslbvm_1_bet: can I use brain-extracted images from other >> analysis? >> À: [log in to unmask] >> Date: Jeudi 13 Août 2009, 16h08 >> Dear all, >> After running fslvbm_1_bet I see that bet didnt work for >> some subjects (neck >> is still included), even if I added some other options >> after -N. >> >> I have brain-extracted T1 images of these subjects from >> another analysis. >> Could I just replace the unscucessful vbm-bet images with >> these images, >> giving them fsl-vbm-related names? >> Do next steps of fsl-vbm use other files than >> xx_struc_brain.nii (e.g. >> xx_struc_brain_mask.nii, xx_struc_brain_skull.nii or >> xx_struc_cut.nii)? >> Knowing this would be very helpful! >> >> Thank you, >> Aga >> > > >