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Hello Group!
Hi Mark,thanks!
 
 
I use cat *.e* and return error in open file niifty
 
and fslview output_all_fast_origsegs.nii.gz  generates an object similar to a potato
 
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I am working with the FSL-first and
maybe my mistake is in the creation of the format  nii.gz
 
because  run  run_first_all   generate errors  name_archive.logs  (directory)
 
 
creation of the format  nii.gz
 
I use
     MRICONVERT dicom->FSL (IMAGE.hdr IMAGE.img) 
    http://lcni.uoregon.edu/~jolinda/MRIConvert/
 
 then
    MRICRON
   http://www.sph.sc.edu/comd/rorden/mricron/ 
    open IMAGE.hdr /img
    and save nii.gz
  
Is this right?
 
also use
fslchfiletype
 
http://www.fmrib.ox.ac.uk/fsl/avwutils/index.html
 
(also generates error in run_first_all)
 
 
thanks , Nicolas.
 
FSL 4.1.4
 
 
 
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> Date: Thu, 20 Aug 2009 16:15:39 +0100
> From: [log in to unmask]
> Subject: Re: [FSL] First Volumen hippocampus ?
> To: [log in to unmask]
>
> Hi,
>
> Sounds like something (maybe one structure) is failing.
> Can you look in the log directory and see if any of the
> *.e* files contain an error message? Just doing
> cat *.e*
> inside that directory will do the job.
>
> Also, look at the file output_all_fast_origsegs.nii.gz in
> FSLView and see if it is doing a reasonable job.
>
> All the best,
> Mark
>
>
> On 20 Aug 2009, at 16:10, diagnostico imagenes wrote:
>
> > Hi group!
> >
> > Hi Mark & Tom
> >
> > Download and Install 4.1.4 FSL
> > and RUN
> >
> > run_first_all -i con01.nii.gz -o output
> >
> > and returns:
> >
> > output-L_Accu_first.vtk
> > output-L_Amyg_first.vtk
> > output-L_Hip_first.vtk
> >
> > .
> > .
> > .
> > output-R_Hip_first.vtk
> > output_to_std_sub.nii.gz
> > output_to_std_sub.mat
> > output.logs -->directory, for example: clean_up.e12523.1 ,
> > first.e4519.17, first_flirt.o4325, first.o4519.2,
> > output.com
> > output_all_fast_origsegs.nii.gz
> >
> > But, no return's
> >
> > output_all_fastfirstseg_.nii.gz
> >
> > thanks, Nicolas.
> >
> >
> > Gratis y optimizado para MSN Nuevo Internet Explorer 8


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