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Dear SPM experts,
I posted this couple of days ago but didn't get any answer. I'm posting it again to try my luck:
I got a wrong segmentation after coregistering my high resolution T1 3D anatomy to the mean EPI. The coregistration turned out to be fine when I checked registration. But the segmentation went completely wrong after the coregistration. When I checked the c1 and c2, they hardly have any shape of the brain. Has anyone had this problem before? Could it be the orientation of my anatomy? Is there a way to fix this?
Thanks,
Wei