Thats right. If you reslice the mprage to match your epi's it will look more like what you'd expect.

M

On Sun, Mar 29, 2009 at 10:46 PM, Rami Niazy <[log in to unmask]> wrote:

Hi,

I am trying to use the latest built of mri_convert (OS X)  to convert dicom images from a siemens trio into a fsl-usable format. The EPI images convert & display fine.  However, an anatomical T1 MPRAGE appears in fslview with the different views messed up: Axial view with the anterior-posterior displayed left-right in the top left panel, and the corresponding coronal in the right panel and the sagittal in the bottom.  The orientation seems to be correct in as far as the posterior-anterior, superior-inferior and left-right information is preserved... it is just displayed awkwardly.  A screen capture of both the epi and mprage scans is attached. Any feedback is much appreciated.

Thanks,

Rami  

--
Research Associate
Gazzaley Lab
Department of Neurology
University of California, San Francisco