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Hi All,

I am registering some IBSR dadaset images using flirt. First I bet the T1 
images like this:
bet head_image brain_image
then I use flirt as follows:
flirt -in brain_image -ref MNI152_T1_1mm_brain -out flirted_image

It failes to register for most of the images (6 from 7). Is there any comment?

Best,
Siamak