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Hi,

 I just got an odd error while running FEAT. All of a sudden it appears 
to have stopped, and restarted the analysis from the beginning (just 
after launching slicetimer).
I don't recall having ever seen this. I'm not an expert, but it seems 
like all of a sudden (after the re-start though) it failed to find what 
it was looking for. This could well be a problem on the cluster, rather 
than FEAT, but I have no clue as to what may have caused the restart..

Could I get some input please?

cheers

 martin


    Progress Report / Log

Started at Fri Jan 25 16:00:11 GMT 2008

Feat main script

/bin/cp /imaging/mm03/Princeton/LingLog2/FSL2/DR/Scripts/Cov8/DR_Cov8.0_LL4.fsf design.fsf

/imaging/local/linux/bin/fsl-4.0.1/bin/feat_model design 

/imaging/local/linux/bin/fsl-4.0.1/bin/fsl_sub -T 25 -l logs -N feat2_pre   /imaging/local/linux/bin/fsl-4.0.1/bin/feat /imaging/mm03/Princeton/LingLog2/FSL2/DR/Scripts/Cov8/DR_Cov8.0_Equivalence2.feat/design.fsf -D /imaging/mm03/Princeton/LingLog2/FSL2/DR/Scripts/Cov8/DR_Cov8.0_Equivalence2.feat -I 1 -prestats

------------------------------------------------------------------------
Prestats

Total original volumes = 259
Deleting 4 volume(s) - BE WARNED for future analysis!

/imaging/local/linux/bin/fsl-4.0.1/bin/fslroi /imaging/mm03/Princeton/LingLog2/FSL2/DR/DR_LL4_bet prefiltered_func_data 4 255

/imaging/local/linux/bin/fsl-4.0.1/bin/fslroi prefiltered_func_data example_func 127 1

/imaging/local/linux/bin/fsl-4.0.1/bin/mcflirt -in prefiltered_func_data -out prefiltered_func_data_mcf -mats -plots -refvol 127 -rmsrel -rmsabs

/bin/mkdir -p mc ; /bin/mv -f prefiltered_func_data_mcf.mat prefiltered_func_data_mcf.par prefiltered_func_data_mcf_abs.rms prefiltered_func_data_mcf_abs_mean.rms prefiltered_func_data_mcf_rel.rms prefiltered_func_data_mcf_rel_mean.rms mc

/imaging/local/linux/bin/fsl-4.0.1/bin/fsl_tsplot -i prefiltered_func_data_mcf.par -t 'MCFLIRT estimated rotations (radians)' -u 1 --start=1 --finish=3 -a x,y,z -w 640 -h 144 -o rot.png 

/imaging/local/linux/bin/fsl-4.0.1/bin/fsl_tsplot -i prefiltered_func_data_mcf.par -t 'MCFLIRT estimated translations (mm)' -u 1 --start=4 --finish=6 -a x,y,z -w 640 -h 144 -o trans.png 

/imaging/local/linux/bin/fsl-4.0.1/bin/fsl_tsplot -i prefiltered_func_data_mcf_abs.rms,prefiltered_func_data_mcf_rel.rms -t 'MCFLIRT estimated mean displacement (mm)' -u 1 -w 640 -h 144 -a absolute,relative -o disp.png 

/imaging/local/linux/bin/fsl-4.0.1/bin/slicetimer -i prefiltered_func_data_mcf --out=prefiltered_func_data_st -r 2.0 --ocustom=/imaging/mm03/Princeton/LingLog2/FSL2/Slice_Order.txt
Total original volumes = 259
Deleting 4 volume(s) - BE WARNED for future analysis!

/imaging/local/linux/bin/fsl-4.0.1/bin/fslroi /imaging/mm03/Princeton/LingLog2/FSL2/DR/DR_LL4_bet prefiltered_func_data 4 255
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory

/imaging/local/linux/bin/fsl-4.0.1/bin/bet prefiltered_func_data_st prefiltered_func_data_bet -F
Error: failed to open file prefiltered_func_data.nii.gz
ERROR: Could not open image prefiltered_func_data
Image Exception : #23 :: Failed to open volume prefiltered_func_data for writing
terminate called after throwing an instance of 'RBD_COMMON::BaseException'

/imaging/local/linux/bin/fsl-4.0.1/bin/fslmaths prefiltered_func_data_bet -thrp 10 -Tmin -bin mask -odt char

/imaging/local/linux/bin/fsl-4.0.1/bin/fslmaths prefiltered_func_data_bet -mas mask prefiltered_func_data_bet