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Thanks thanks thanks !!!
 
I tried it (Featquery with a Mask) already twice now: it works for me as well. 
 
Really appreciate all efforts made.
 
Anda van Stegeren
 
Drs. Anda van Stegeren,
University of Amsterdam
Department of Clinical Psychology
Roetersstraat 15
1018 WB Amsterdam
The Netherlands
tel. ++ 31 20 525 6799
fax. ++31 20 639 1369
E-mail: [log in to unmask] 

________________________________

Van: FSL - FMRIB's Software Library namens Stephen Smith
Verzonden: wo 11-8-2004 3:50
Aan: [log in to unmask]
Onderwerp: Re: [FSL] featquery seems to prefer Linux



Thanks to everyone, particularly Michael Lipton, for helping look into
this.  It turns out to be a bug in the version of TCL that is bundled with
Cygwin.

I _think_ that an easy fix is the following. It relies on your version of
Cygwin being sufficiently recent to have tclsh8.4 come with it - you can
check this with:
ls -l /bin/tclsh84.exe
to see if it's there.

The fix for Featquery is to edit
/usr/local/fsl/bin/featquery
and near the top change
${FSLDIR}/bin/tclsh
to
/bin/tclsh

Feedback appreciated!

Cheers, Steve.


On Mon, 9 Aug 2004, Leonardo Bonilha wrote:

> Dear Stephen M. Smith and colleagues,
>
> I recently confronted myself with the same problem that motivated Anda van
> Stegeren and Kerstin Preuschoff to write to the list earlier this year: I
> was not able to make featquery (working under Windows XP/Cygwin) to run
> properly either using a mask or by trying to define standard space
> coordinates.
>
> Shortly, what I did was to create a mask with MRIcro using the
> example_func.img, or alternatively a high resolution image in standard
> space. Within both cases, I received a message stating that the mask size
> did not match any of the images in the FEAT directory. Just to ensure that
> I was wasn't using different dimension-sized images, I then used avwhd and
> fine tuned the images (the mask and its matching image) to be exactly the
> same. Yet, the same error remained.
>
> Suspecting that this could be due to a Windows/Cygwin version bug, I then
> tried to run the same analysis, i.e., to use exactly the same masks, this
> time using Linux (Suse9.1). And it worked uneventfully.
>
> Therefore it seems that this problem with featquery appears to be
> restricted to the Windows version of FSL.
>
> Best wishes
>
> Leonardo Bonilha
>
> Div of Psychiatry and
> School of Psychology
> University of Nottingham, NG7 2RD
> Tel: +44 (0) 115 - 95 -15308
> http://www.psychology.nottingham.ac.uk/staff/lxb/
>

 Stephen M. Smith  DPhil
 Associate Director, FMRIB and Analysis Research Coordinator

 Oxford University Centre for Functional MRI of the Brain
 John Radcliffe Hospital, Headington, Oxford OX3 9DU, UK
 +44 (0) 1865 222726  (fax 222717)

 [log in to unmask]  http://www.fmrib.ox.ac.uk/~steve