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Dear Chris, thanks a lot, this is a very helpful suggestion! I tried, and it works. Best greetings, Matthias Dr. med. Matthias Kraemer Neurologische Klinik Universitätsklinikum Düsseldorf Heinrich-Heine-Universität Moorenstr. 5 D-40225 Düsseldorf Tel: +49-211-81-17038 Fax: +49-211-81-17038 Email: [log in to unmask] -----Ursprüngliche Nachricht----- Von: FSL - FMRIB's Software Library [mailto:[log in to unmask]] Im Auftrag von Christopher Bailey Gesendet: Montag, 2. August 2004 15:17 An: [log in to unmask] Betreff: Re: [FSL] orientation Dear Dr. med. Kraemer, If you open such an analyze file in mricro, you will no doubt see the same: the axes have been rotated. The best thing to do is to open the converted analyze file in mricro and select File->Save as... [rotate/clip...]. In the little window that pops up, try changing the Format from Axial to Sagittal or Coronal (your acquisition has most likely been other than axial slices). Then click the Preview button and make sure you see the images as mricro tells you: "If you have correctly...". Finally you have to make sure left is where it should be (in the case of mricro and fslview: left is right)... Good luck, Chris -- Christopher Bailey <[log in to unmask]> MSc Physicist (FMRI/MEG research) Center for Functionally Integrative Neuroscience Aarhus University Hospital, Denmark http://www.cfin.au.dk/ On Mon, 2004-08-02 at 12:52, Matthias Kraemer wrote: > Loading a segmented brain into FSLVIEW after conversion from DICOM to > ANALYZE in MRICRO I get the wrong orientation of the brain, i. e. x=y, > y=z, and z=x. What went wrong? > > > > Dr. med. Matthias Kraemer > Neurologische Klinik > Universitätsklinikum Düsseldorf > Heinrich-Heine-Universität > Moorenstr. 5 > D-40225 Düsseldorf > Tel: +49-211-81-17038 > Fax: +49-211-81-17038 > Email: [log in to unmask] > >