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Hi Jack, check the report.com file in one of your .feat dirs. After having called mcflirt, the plots are generated from the .par file with the help of gnuplot, the relevant command in report.com starts with echo "set term pbm color..." cheers christian On 13 Jan 2004, at 08:03, Jack Grinband wrote: > Hi Mark, > How are the .ppm files generated (i.e. rot.ppm, trans.ppm & disp.ppm)? > > I'm running the following command: > > mcflirt -in myfile -o myfile_mc -cost mutualinfo -refvol 0 -stats > -plots -rmsrel -rmsabs > -report > > but I'm not seeing any .ppm files. The feat report.log doesn't show > any other commands that > could possibly generate them. > thanks, > > jack > -- Christian F. Beckmann Oxford University Centre for Functional Magnetic Resonance Imaging of the Brain, John Radcliffe Hospital, Headington, Oxford OX3 9DU, UK Email: [log in to unmask] - http://www.fmrib.ox.ac.uk/~beckmann/ Phone: +44(0)1865 222782 Fax: +44(0)1865 222717