Hi Steve,
This worked perfectly on my first try!
Thank you very much for your efforts and responsiveness.
Best,
Michael
-----Original Message-----
From: Stephen Smith [mailto:[log in to unmask]]
Sent: Wednesday, August 11, 2004 11:51 AM
To: [log in to unmask]
Subject: Re: [FSL] featquery seems to prefer Linux
Thanks to everyone, particularly Michael Lipton, for helping look into this.
It turns out to be a bug in the version of TCL that is bundled with Cygwin.
I _think_ that an easy fix is the following. It relies on your version of
Cygwin being sufficiently recent to have tclsh8.4 come with it - you can
check this with: ls -l /bin/tclsh84.exe to see if it's there.
The fix for Featquery is to edit
/usr/local/fsl/bin/featquery
and near the top change
${FSLDIR}/bin/tclsh
to
/bin/tclsh
Feedback appreciated!
Cheers, Steve.
On Mon, 9 Aug 2004, Leonardo Bonilha wrote:
> Dear Stephen M. Smith and colleagues,
>
> I recently confronted myself with the same problem that motivated Anda
> van Stegeren and Kerstin Preuschoff to write to the list earlier this
> year: I was not able to make featquery (working under Windows
> XP/Cygwin) to run properly either using a mask or by trying to define
> standard space coordinates.
>
> Shortly, what I did was to create a mask with MRIcro using the
> example_func.img, or alternatively a high resolution image in standard
> space. Within both cases, I received a message stating that the mask
> size did not match any of the images in the FEAT directory. Just to
> ensure that I was wasn't using different dimension-sized images, I
> then used avwhd and fine tuned the images (the mask and its matching
> image) to be exactly the same. Yet, the same error remained.
>
> Suspecting that this could be due to a Windows/Cygwin version bug, I
> then tried to run the same analysis, i.e., to use exactly the same
> masks, this time using Linux (Suse9.1). And it worked uneventfully.
>
> Therefore it seems that this problem with featquery appears to be
> restricted to the Windows version of FSL.
>
> Best wishes
>
> Leonardo Bonilha
>
> Div of Psychiatry and
> School of Psychology
> University of Nottingham, NG7 2RD
> Tel: +44 (0) 115 - 95 -15308
> http://www.psychology.nottingham.ac.uk/staff/lxb/
>
Stephen M. Smith DPhil
Associate Director, FMRIB and Analysis Research Coordinator
Oxford University Centre for Functional MRI of the Brain
John Radcliffe Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222726 (fax 222717)
[log in to unmask] http://www.fmrib.ox.ac.uk/~steve
