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Hi Christian,
I found it... but only in some feat directories.  I'm not 100% sure, but I think the commands do
not get recorded in report.com if you only do preprocessing.  Kinda strange.  Anyway, thanks,

jack


>Hi Jack,
>
>check the report.com file in one of your .feat dirs.
>After having called mcflirt, the plots are generated from the .par file
>with the help of gnuplot, the relevant command in report.com starts
>with
>
>echo "set term pbm color..."
>
>cheers
>christian
>
>
>
>On 13 Jan 2004, at 08:03, Jack Grinband wrote:
>
>> Hi Mark,
>> How are the .ppm files generated (i.e. rot.ppm, trans.ppm & disp.ppm)?
>>
>> I'm running the following command:
>>
>> mcflirt -in myfile -o myfile_mc -cost mutualinfo -refvol 0 -stats
>> -plots -rmsrel -rmsabs
>> -report
>>
>> but I'm not seeing any .ppm files.  The feat report.log doesn't show
>> any other commands that
>> could possibly generate them.
>> thanks,
>>
>> jack
>>
>--
>  Christian F. Beckmann
>  Oxford University Centre for Functional
>  Magnetic Resonance Imaging of the Brain,
>  John Radcliffe Hospital, Headington, Oxford OX3 9DU, UK
>  Email: [log in to unmask] - http://www.fmrib.ox.ac.uk/~beckmann/
>  Phone:   +44(0)1865 222782 Fax: +44(0)1865 222717