In your case it sounds like you want to register two images of the same brain to each other (i.e., a T1w and a FLAIR). So, from Paul's email we can then see that we should use FLIRT.
Cheers,
Michiel
> On 21 Nov 2019, at 21:38, Adam John <[log in to unmask]> wrote:
>
> Hello all,
>
> please, could you help me with this case?
>
> Thanks
>
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